IL_5MRC_062

3D structure

PDB id

5MRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5MRC|1|A|C|1955, 5MRC|1|A|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRC_062 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.3952

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5MRC|1|A|A|1954
5MRC|1|A|C|1955
5MRC|1|A|G|1956
*
5MRC|1|A|C|2879
5MRC|1|A|U|2880
5MRC|1|A|A|2881
5MRC|1|A|U|2882

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain O

uL22m

Chain W

bL32m