IL_5MRC_116

3D structure

PDB id

5MRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAA*UU

Length

5 nucleotides

Bulged bases

5MRC|1|aa|A|694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRC_116 not in the Motif Atlas

Geometric match to IL_1DUQ_002

Geometric discrepancy: 0.2836

The information below is about IL_1DUQ_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5MRC|1|aa|G|693
5MRC|1|aa|A|694
5MRC|1|aa|A|695
*
5MRC|1|aa|U|821
5MRC|1|aa|U|822

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain HH

uS8m

Chain LL

uS12m

Chain OO

uS15m

Chain QQ

uS17m