IL_5MRE_008
3D structure
- PDB id
- 5MRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UGAACUG*CUAAGUAA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MRE_008 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0669
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5MRE|1|A|U|228
5MRE|1|A|G|229
5MRE|1|A|A|230
5MRE|1|A|A|231
5MRE|1|A|C|232
5MRE|1|A|U|233
5MRE|1|A|G|234
*
5MRE|1|A|C|241
5MRE|1|A|U|242
5MRE|1|A|A|243
5MRE|1|A|A|244
5MRE|1|A|G|245
5MRE|1|A|U|246
5MRE|1|A|A|247
5MRE|1|A|A|248
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain J
- uL15m
- Chain S
- bL28m
Coloring options: