IL_5MRE_009

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAGUAU*AGAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_009 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.129

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5MRE|1|A|U|279
5MRE|1|A|G|280
5MRE|1|A|A|281
5MRE|1|A|G|282
5MRE|1|A|U|283
5MRE|1|A|A|284
5MRE|1|A|U|285
*
5MRE|1|A|A|293
5MRE|1|A|G|294
5MRE|1|A|A|295
5MRE|1|A|A|296
5MRE|1|A|A|297
5MRE|1|A|A|298

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

uL15m

Chain Z

bL35m