IL_5MRE_012

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_012 not in the Motif Atlas

Geometric match to IL_5TBW_046

Geometric discrepancy: 0.2216

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5MRE|1|A|U|537
5MRE|1|A|A|538
5MRE|1|A|U|539
*
5MRE|1|A|A|546
5MRE|1|A|A|547
5MRE|1|A|A|548

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 1

mL38

Chain J

uL15m

Chain R

bL27m

Chain Z

bL35m