IL_5MRE_022
3D structure
- PDB id
- 5MRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UGGUAC*GAAAUA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MRE_022 not in the Motif Atlas
- Homologous match to IL_7A0S_027
- Geometric discrepancy: 0.1585
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MRE|1|A|U|780
5MRE|1|A|G|781
5MRE|1|A|G|782
5MRE|1|A|U|783
5MRE|1|A|A|784
5MRE|1|A|C|785
*
5MRE|1|A|G|841
5MRE|1|A|A|842
5MRE|1|A|A|843
5MRE|1|A|A|844
5MRE|1|A|U|845
5MRE|1|A|A|846
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain E
- uL5m
- Chain K
- uL16m
- Chain R
- bL27m
- Chain U
- uL30m
- Chain c
- mL60
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