IL_5MRE_025

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

5MRE|1|A|A|798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_025 not in the Motif Atlas

Geometric match to IL_5TBW_060

Geometric discrepancy: 0.2049

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5MRE|1|A|U|797
5MRE|1|A|A|798
5MRE|1|A|U|799
*
5MRE|1|A|A|828
5MRE|1|A|A|829

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

uL5m

Chain K

uL16m