IL_5MRE_038

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_038 not in the Motif Atlas

Geometric match to IL_3RG5_002

Geometric discrepancy: 0.1621

The information below is about IL_3RG5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5MRE|1|A|A|1372
5MRE|1|A|U|1373
5MRE|1|A|U|1374
*
5MRE|1|A|A|1392
5MRE|1|A|U|1393
5MRE|1|A|U|1394

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m

Chain S

bL28m

Chain Y

bL34m