IL_5MRE_045

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAUAAU*AGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_045 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.2291

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5MRE|1|A|G|1603
5MRE|1|A|A|1604
5MRE|1|A|U|1605
5MRE|1|A|A|1606
5MRE|1|A|A|1607
5MRE|1|A|U|1608
*
5MRE|1|A|A|1904
5MRE|1|A|G|1905
5MRE|1|A|C|1906

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain L

bL17m