IL_5MRE_051

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

5MRE|1|A|A|1881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_051 not in the Motif Atlas

Homologous match to IL_7RQB_069

Geometric discrepancy: 0.0828

The information below is about IL_7RQB_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5MRE|1|A|A|1677
5MRE|1|A|C|1678
*
5MRE|1|A|G|1880
5MRE|1|A|A|1881
5MRE|1|A|U|1882

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain B

uL2m