IL_5MRE_052

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGCAGAA*UUAAGUAUA

Length

16 nucleotides

Bulged bases

5MRE|1|A|A|1708, 5MRE|1|A|A|1724, 5MRE|1|A|U|1728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_052 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1886

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5MRE|1|A|U|1705
5MRE|1|A|G|1706
5MRE|1|A|C|1707
5MRE|1|A|A|1708
5MRE|1|A|G|1709
5MRE|1|A|A|1710
5MRE|1|A|A|1711
*
5MRE|1|A|U|1721
5MRE|1|A|U|1722
5MRE|1|A|A|1723
5MRE|1|A|A|1724
5MRE|1|A|G|1725
5MRE|1|A|U|1726
5MRE|1|A|A|1727
5MRE|1|A|U|1728
5MRE|1|A|A|1729

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m

Chain aa

Small subunit ribosomal RNA; SSU rRNA