IL_5MRE_055

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5MRE|1|A|A|1800, 5MRE|1|A|A|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_055 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.2451

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5MRE|1|A|U|1749
5MRE|1|A|G|1750
*
5MRE|1|A|U|1799
5MRE|1|A|A|1800
5MRE|1|A|A|1801
5MRE|1|A|A|1802

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m