IL_5MRE_066

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUAG*CU

Length

6 nucleotides

Bulged bases

5MRE|1|A|U|1989, 5MRE|1|A|A|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_066 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2673

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5MRE|1|A|A|1988
5MRE|1|A|U|1989
5MRE|1|A|A|1990
5MRE|1|A|G|1991
*
5MRE|1|A|C|2256
5MRE|1|A|U|2257

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m

Chain G

bL9m

Chain S

bL28m