IL_5MRE_072

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_072 not in the Motif Atlas

Homologous match to IL_7RQB_090

Geometric discrepancy: 0.2402

The information below is about IL_7RQB_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

5MRE|1|A|C|2668
5MRE|1|A|A|2669
5MRE|1|A|C|2670
*
5MRE|1|A|G|2681
5MRE|1|A|G|2682

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

uL15m

Chain X

bL33m

Chain Z

bL35m

Chain b

mL59