IL_5MRE_073

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_073 not in the Motif Atlas

Geometric match to IL_1I6U_001

Geometric discrepancy: 0.1425

The information below is about IL_1I6U_001

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

5MRE|1|A|G|2720
5MRE|1|A|G|2721
*
5MRE|1|A|C|2762
5MRE|1|A|A|2763
5MRE|1|A|C|2764

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain K

uL16m

Chain c

mL60