IL_5MRE_080

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UC*GAAG

Length

6 nucleotides

Bulged bases

5MRE|1|A|A|2809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_080 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.0885

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

5MRE|1|A|U|2788
5MRE|1|A|C|2789
*
5MRE|1|A|G|2807
5MRE|1|A|A|2808
5MRE|1|A|A|2809
5MRE|1|A|G|2810

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

bL36m

Chain H

uL13m