IL_5MRE_087

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AAUAAA*UGAAGU

Length

12 nucleotides

Bulged bases

5MRE|1|A|A|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_087 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0804

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5MRE|1|A|A|3073
5MRE|1|A|A|3074
5MRE|1|A|U|3075
5MRE|1|A|A|3076
5MRE|1|A|A|3077
5MRE|1|A|A|3078
*
5MRE|1|A|U|3099
5MRE|1|A|G|3100
5MRE|1|A|A|3101
5MRE|1|A|A|3102
5MRE|1|A|G|3103
5MRE|1|A|U|3104

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

bL36m

Chain F

uL6m

Chain H

uL13m