IL_5MRE_088

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AAUC*GU

Length

6 nucleotides

Bulged bases

5MRE|1|A|A|3124, 5MRE|1|A|U|3125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_088 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2556

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5MRE|1|A|A|3123
5MRE|1|A|A|3124
5MRE|1|A|U|3125
5MRE|1|A|C|3126
*
5MRE|1|A|G|3259
5MRE|1|A|U|3260

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain L

bL17m

Chain M

bL19m

Chain a

mL58