IL_5MRE_096

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAUGAC*GAG

Length

9 nucleotides

Bulged bases

5MRE|1|aa|A|55, 5MRE|1|aa|A|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_096 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.1149

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5MRE|1|aa|C|54
5MRE|1|aa|A|55
5MRE|1|aa|U|56
5MRE|1|aa|G|57
5MRE|1|aa|A|58
5MRE|1|aa|C|59
*
5MRE|1|aa|G|363
5MRE|1|aa|A|364
5MRE|1|aa|G|365

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain LL

uS12m