IL_5MRE_110

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

5MRE|1|aa|G|392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_110 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.0881

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5MRE|1|aa|U|379
5MRE|1|aa|G|380
*
5MRE|1|aa|U|391
5MRE|1|aa|G|392
5MRE|1|aa|A|393

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 22

mS41

Chain PP

bS16m