IL_5MRE_124

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAA*UGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_124 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1496

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5MRE|1|aa|C|844
5MRE|1|aa|G|845
5MRE|1|aa|A|846
5MRE|1|aa|A|847
5MRE|1|aa|A|848
*
5MRE|1|aa|U|864
5MRE|1|aa|G|865
5MRE|1|aa|U|866
5MRE|1|aa|A|867
5MRE|1|aa|G|868

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain KK

uS11m

Chain TT

bS21m