IL_5MRE_127

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

5MRE|1|aa|A|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_127 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2169

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5MRE|1|aa|G|987
5MRE|1|aa|A|988
5MRE|1|aa|C|989
*
5MRE|1|aa|G|1460
5MRE|1|aa|C|1461
5MRE|1|aa|A|1462
5MRE|1|aa|C|1463

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain EE

uS5m