IL_5MRE_133

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UACA*UG

Length

6 nucleotides

Bulged bases

5MRE|1|aa|A|1100, 5MRE|1|aa|C|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_133 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.2252

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5MRE|1|aa|U|1099
5MRE|1|aa|A|1100
5MRE|1|aa|C|1101
5MRE|1|aa|A|1102
*
5MRE|1|aa|U|1237
5MRE|1|aa|G|1238

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain CC

uS3m

Chain JJ

uS10m

Chain XX

mS33