IL_5MRE_140

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAAUU*AUGAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_140 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.1197

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5MRE|1|aa|U|1371
5MRE|1|aa|G|1372
5MRE|1|aa|A|1373
5MRE|1|aa|A|1374
5MRE|1|aa|U|1375
5MRE|1|aa|U|1376
*
5MRE|1|aa|A|1397
5MRE|1|aa|U|1398
5MRE|1|aa|G|1399
5MRE|1|aa|A|1400
5MRE|1|aa|A|1401
5MRE|1|aa|A|1402

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain MM

uS13m