IL_5MRE_141

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAC*GG

Length

5 nucleotides

Bulged bases

5MRE|1|aa|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_141 not in the Motif Atlas

Geometric match to IL_5J7L_246

Geometric discrepancy: 0.2269

The information below is about IL_5J7L_246

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5MRE|1|aa|U|1419
5MRE|1|aa|A|1420
5MRE|1|aa|C|1421
*
5MRE|1|aa|G|1439
5MRE|1|aa|G|1440

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain GG

uS7m

Chain II

uS9m

Chain JJ

uS10m

Chain NN

uS14m