IL_5MRE_149

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUA*UUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_149 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.154

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

5MRE|1|aa|U|1505
5MRE|1|aa|U|1506
5MRE|1|aa|U|1507
5MRE|1|aa|A|1508
*
5MRE|1|aa|U|1554
5MRE|1|aa|U|1555
5MRE|1|aa|U|1556
5MRE|1|aa|A|1557

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain M

bL19m

Chain OO

uS15m