IL_5MRE_150

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

5MRE|1|aa|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_150 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.2665

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5MRE|1|aa|A|1510
5MRE|1|aa|U|1511
5MRE|1|aa|A|1512
*
5MRE|1|aa|U|1551
5MRE|1|aa|U|1552

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 55

mS44

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain M

bL19m