IL_5MRE_152

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_152 not in the Motif Atlas

Geometric match to IL_2QWY_008

Geometric discrepancy: 0.2722

The information below is about IL_2QWY_008

Detailed Annotation

Single stack bend with SAM intercalation

Broad Annotation

Single stack bend with SAM intercalation

Motif group

IL_75501.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5MRE|1|aa|A|1526
5MRE|1|aa|A|1527
5MRE|1|aa|U|1528
*
5MRE|1|aa|A|1536
5MRE|1|aa|U|1537

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 55

mS44

Chain dd

unknown protein sequence 2