IL_5MRF_022
3D structure
- PDB id
- 5MRF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.97 Å
Loop
- Sequence
- UGGUAC*GAAAUA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MRF_022 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1586
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MRF|1|A|U|780
5MRF|1|A|G|781
5MRF|1|A|G|782
5MRF|1|A|U|783
5MRF|1|A|A|784
5MRF|1|A|C|785
*
5MRF|1|A|G|841
5MRF|1|A|A|842
5MRF|1|A|A|843
5MRF|1|A|A|844
5MRF|1|A|U|845
5MRF|1|A|A|846
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain E
- uL5m
- Chain K
- uL16m
- Chain R
- bL27m
- Chain U
- uL30m
- Chain c
- mL60
Coloring options: