IL_5MRF_039

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UAAA*UA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_039 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2138

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5MRF|1|A|U|1374
5MRF|1|A|A|1380
5MRF|1|A|A|1381
5MRF|1|A|A|1382
*
5MRF|1|A|U|1391
5MRF|1|A|A|1392

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m

Chain S

bL28m