IL_5MRF_048

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

5MRF|1|A|G|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_048 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0601

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5MRF|1|A|A|1621
5MRF|1|A|C|1622
5MRF|1|A|U|1623
5MRF|1|A|C|1624
5MRF|1|A|G|1625
5MRF|1|A|G|1626
*
5MRF|1|A|C|1890
5MRF|1|A|U|1891
5MRF|1|A|G|1892
5MRF|1|A|U|1893

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain I

uL14m