IL_5MRF_087

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

AAUAAA*UGAAGU

Length

12 nucleotides

Bulged bases

5MRF|1|A|A|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_087 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0804

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5MRF|1|A|A|3073
5MRF|1|A|A|3074
5MRF|1|A|U|3075
5MRF|1|A|A|3076
5MRF|1|A|A|3077
5MRF|1|A|A|3078
*
5MRF|1|A|U|3099
5MRF|1|A|G|3100
5MRF|1|A|A|3101
5MRF|1|A|A|3102
5MRF|1|A|G|3103
5MRF|1|A|U|3104

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

bL36m

Chain F

uL6m

Chain H

uL13m