IL_5MRF_098

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

5MRF|1|aa|A|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_098 not in the Motif Atlas

Geometric match to IL_3MJA_001

Geometric discrepancy: 0.226

The information below is about IL_3MJA_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

5MRF|1|aa|U|127
5MRF|1|aa|A|128
5MRF|1|aa|G|129
*
5MRF|1|aa|C|238
5MRF|1|aa|A|239

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain QQ

uS17m

Chain VV

mS26