IL_5MRF_117

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_117 not in the Motif Atlas

Geometric match to IL_5J7L_031

Geometric discrepancy: 0.0971

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5MRF|1|aa|G|717
5MRF|1|aa|A|718
*
5MRF|1|aa|U|816
5MRF|1|aa|G|817
5MRF|1|aa|A|818
5MRF|1|aa|C|819

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain HH

uS8m

Chain OO

uS15m

Chain UU

mS23

Chain VV

mS26