IL_5NCO_003

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CG*CCG

Length

5 nucleotides

Bulged bases

5NCO|1|1|C|87

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_003 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.1535

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5NCO|1|1|C|21
5NCO|1|1|G|22
*
5NCO|1|1|C|86
5NCO|1|1|C|87
5NCO|1|1|G|88

Current chains

Chain 1

4.5S SRP RNA (Ffs)

Nearby chains

Chain l

Signal recognition particle receptor FtsY