IL_5NCO_014

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5NCO|1|A|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_014 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.1784

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5NCO|1|A|C|274
5NCO|1|A|C|275
5NCO|1|A|U|276
5NCO|1|A|G|277
5NCO|1|A|A|278
5NCO|1|A|A|279
5NCO|1|A|U|280
5NCO|1|A|C|281
*
5NCO|1|A|G|359
5NCO|1|A|U|360
5NCO|1|A|G|361
5NCO|1|A|A|362
5NCO|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains