IL_5NCO_036

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

5NCO|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_036 not in the Motif Atlas

Geometric match to IL_1L9A_004

Geometric discrepancy: 0.373

The information below is about IL_1L9A_004

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5NCO|1|A|G|879
5NCO|1|A|G|880
5NCO|1|A|G|881
*
5NCO|1|A|U|895
5NCO|1|A|A|896
5NCO|1|A|C|897
5NCO|1|A|C|898

Current chains

Chain A

23S rRNA

Nearby chains