IL_5NCO_056

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

5NCO|1|A|U|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_056 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.2429

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5NCO|1|A|U|1415
5NCO|1|A|G|1416
*
5NCO|1|A|C|1582
5NCO|1|A|A|1583
5NCO|1|A|U|1584
5NCO|1|A|C|1585
5NCO|1|A|A|1586
5NCO|1|A|G|1587

Current chains

Chain A

23S rRNA

Nearby chains