IL_5NCO_071

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5NCO|1|A|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_071 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0938

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5NCO|1|A|U|1712
5NCO|1|A|A|1713
5NCO|1|A|U|1714
5NCO|1|A|G|1715
5NCO|1|A|U|1716
5NCO|1|A|A|1717
5NCO|1|A|G|1718
*
5NCO|1|A|U|1742
5NCO|1|A|G|1743
5NCO|1|A|A|1744
5NCO|1|A|A|1745
5NCO|1|A|A|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain g

Protein translocase subunit SecY