IL_5NCO_076

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5NCO|1|A|A|1899, 5NCO|1|A|A|1900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_076 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1513

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5NCO|1|A|U|1841
5NCO|1|A|G|1842
*
5NCO|1|A|U|1898
5NCO|1|A|A|1899
5NCO|1|A|A|1900
5NCO|1|A|A|1901

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2