IL_5NCO_078

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_078 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.0771

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|U|1864
5NCO|1|A|U|1865
5NCO|1|A|A|1866
5NCO|1|A|G|1867
*
5NCO|1|A|C|1874
5NCO|1|A|G|1875
5NCO|1|A|A|1876
5NCO|1|A|A|1877
5NCO|1|A|G|1878

Current chains

Chain A

23S rRNA

Nearby chains