IL_5NCO_088

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5NCO|1|A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_088 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.5038

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5NCO|1|A|C|2129
5NCO|1|A|U|2130
5NCO|1|A|U|2131
5NCO|1|A|U|2132
5NCO|1|A|G|2133
5NCO|1|A|A|2134
5NCO|1|A|A|2135
5NCO|1|A|G|2136
*
5NCO|1|A|U|2155
5NCO|1|A|G|2156
5NCO|1|A|G|2157
5NCO|1|A|A|2158
5NCO|1|A|G|2159

Current chains

Chain A

23S rRNA

Nearby chains