IL_5NCO_125

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGU

Length

35 nucleotides

Bulged bases

5NCO|1|A|G|2110, 5NCO|1|A|U|2111, 5NCO|1|A|A|2114, 5NCO|1|A|G|2115, 5NCO|1|A|G|2116, 5NCO|1|A|A|2117, 5NCO|1|A|U|2118, 5NCO|1|A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NCO|1|A|G|2102
5NCO|1|A|C|2103
5NCO|1|A|C|2104
5NCO|1|A|U|2105
5NCO|1|A|U|2106
5NCO|1|A|G|2107
5NCO|1|A|A|2108
5NCO|1|A|U|2109
5NCO|1|A|G|2110
5NCO|1|A|U|2111
5NCO|1|A|G|2112
5NCO|1|A|U|2113
5NCO|1|A|A|2114
5NCO|1|A|G|2115
5NCO|1|A|G|2116
5NCO|1|A|A|2117
5NCO|1|A|U|2118
5NCO|1|A|A|2119
5NCO|1|A|G|2120
5NCO|1|A|G|2121
5NCO|1|A|U|2122
5NCO|1|A|G|2123
*
5NCO|1|A|C|2175
5NCO|1|A|A|2176
5NCO|1|A|C|2177
5NCO|1|A|C|2178
5NCO|1|A|C|2179
5NCO|1|A|U|2180
5NCO|1|A|U|2181
5NCO|1|A|U|2182
5NCO|1|A|A|2183
5NCO|1|A|A|2184
5NCO|1|A|U|2185
5NCO|1|A|G|2186
5NCO|1|A|U|2187

Current chains

Chain A

23S rRNA

Nearby chains