IL_5NCO_126

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5NCO|1|A|A|2126, 5NCO|1|A|C|2161, 5NCO|1|A|C|2164, 5NCO|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_126 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.1354

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5NCO|1|A|G|2123
5NCO|1|A|G|2124
5NCO|1|A|G|2125
5NCO|1|A|A|2126
5NCO|1|A|G|2127
5NCO|1|A|G|2128
*
5NCO|1|A|C|2160
5NCO|1|A|C|2161
5NCO|1|A|G|2162
5NCO|1|A|A|2163
5NCO|1|A|C|2164
5NCO|1|A|C|2165
5NCO|1|A|U|2166
5NCO|1|A|U|2167
5NCO|1|A|G|2168
5NCO|1|A|A|2169
5NCO|1|A|A|2170
5NCO|1|A|A|2171
5NCO|1|A|U|2172
5NCO|1|A|A|2173
5NCO|1|A|C|2174
5NCO|1|A|C|2175

Current chains

Chain A

23S rRNA

Nearby chains