IL_5ND8_008

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1246

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5ND8|1|A|C|241
5ND8|1|A|U|242
5ND8|1|A|U|243
5ND8|1|A|A|244
5ND8|1|A|G|245
5ND8|1|A|U|246
5ND8|1|A|A|247
5ND8|1|A|G|248
*
5ND8|1|A|C|256
5ND8|1|A|G|257
5ND8|1|A|A|258
5ND8|1|A|A|259
5ND8|1|A|A|260
5ND8|1|A|U|261
5ND8|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15