3D structure

PDB id
5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hibernating ribosome from Staphylococcus aureus (Unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AGGA*UUUAAAGAGUGCGUAAUAGCUCACU
Length
29 nucleotides
Bulged bases
5ND8|1|A|A|1132
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5ND8|1|A|A|1098
5ND8|1|A|G|1099
5ND8|1|A|G|1100
5ND8|1|A|A|1101
*
5ND8|1|A|U|1125
5ND8|1|A|U|1126
5ND8|1|A|U|1127
5ND8|1|A|A|1128
5ND8|1|A|A|1129
5ND8|1|A|A|1130
5ND8|1|A|G|1131
5ND8|1|A|A|1132
5ND8|1|A|G|1133
5ND8|1|A|U|1134
5ND8|1|A|G|1135
5ND8|1|A|C|1136
5ND8|1|A|G|1137
5ND8|1|A|U|1138
5ND8|1|A|A|1139
5ND8|1|A|A|1140
5ND8|1|A|U|1141
5ND8|1|A|A|1142
5ND8|1|A|G|1143
5ND8|1|A|C|1144
5ND8|1|A|U|1145
5ND8|1|A|C|1146
5ND8|1|A|A|1147
5ND8|1|A|C|1148
5ND8|1|A|U|1149

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain H
50S ribosomal protein L6

Coloring options:

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