IL_5ND8_048

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_048 not in the Motif Atlas

Homologous match to IL_4WF9_051

Geometric discrepancy: 0.1505

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5ND8|1|A|C|1388
5ND8|1|A|U|1389
5ND8|1|A|A|1390
5ND8|1|A|A|1391
5ND8|1|A|G|1392
*
5ND8|1|A|C|1413
5ND8|1|A|G|1414
5ND8|1|A|A|1415
5ND8|1|A|U|1416
5ND8|1|A|G|1417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2