IL_5ND8_050

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAAUCGUUUUAAU*AUAGAAAAU

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|A|A|1447
5ND8|1|A|U|1448
5ND8|1|A|A|1449
5ND8|1|A|A|1450
5ND8|1|A|U|1451
5ND8|1|A|C|1452
5ND8|1|A|G|1453
5ND8|1|A|U|1454
5ND8|1|A|U|1455
5ND8|1|A|U|1456
5ND8|1|A|U|1457
5ND8|1|A|A|1458
5ND8|1|A|A|1459
5ND8|1|A|U|1460
*
5ND8|1|A|A|1628
5ND8|1|A|U|1629
5ND8|1|A|A|1630
5ND8|1|A|G|1631
5ND8|1|A|A|1632
5ND8|1|A|A|1633
5ND8|1|A|A|1634
5ND8|1|A|A|1635
5ND8|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains