IL_5ND8_052

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAGG*CACAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_052 not in the Motif Atlas

Homologous match to IL_4WF9_122

Geometric discrepancy: 0.3516

The information below is about IL_4WF9_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67780.1

Basepair signature

cWW-cSH-L-R-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5ND8|1|A|G|1476
5ND8|1|A|U|1477
5ND8|1|A|A|1478
5ND8|1|A|G|1479
5ND8|1|A|G|1480
*
5ND8|1|A|C|1604
5ND8|1|A|A|1605
5ND8|1|A|C|1606
5ND8|1|A|A|1607
5ND8|1|A|C|1608

Current chains

Chain A

23S ribosomal RNA

Nearby chains