IL_5ND8_053

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAG*UGAUGG

Length

11 nucleotides

Bulged bases

5ND8|1|A|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_053 not in the Motif Atlas

Homologous match to IL_4WF9_116

Geometric discrepancy: 0.2843

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5ND8|1|A|C|1511
5ND8|1|A|U|1512
5ND8|1|A|A|1513
5ND8|1|A|A|1514
5ND8|1|A|G|1515
*
5ND8|1|A|U|1565
5ND8|1|A|G|1566
5ND8|1|A|A|1567
5ND8|1|A|U|1568
5ND8|1|A|G|1569
5ND8|1|A|G|1570

Current chains

Chain A

23S ribosomal RNA

Nearby chains